PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10004707
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family LBD
Protein Properties Length: 199aa    MW: 22003.8 Da    PI: 6.4947
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10004707genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260114.95.2e-3641041100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++Cv+apyf  +q +++f +vhk+FGasnv+kll +lp + r+da+ +++y+A ar++dP yG+v+ i++lqqq+++ ++e++  
  Lus10004707   4 SCGACKFLRRKCMQECVFAPYFSYHQaASHFGAVHKVFGASNVSKLLLRLPVNFRSDAAVTIAYQALARIQDPAYGCVSYIMALQQQVASIQHEIEIF 101
                  6**********************99978*******************************************************************988 PP

       DUF260  98 kee 100
                   ++
  Lus10004707 102 SHQ 104
                  877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.3373105IPR004883Lateral organ boundaries, LOB
PfamPF031959.8E-354100IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MGSSCGACKF LRRKCMQECV FAPYFSYHQA ASHFGAVHKV FGASNVSKLL LRLPVNFRSD  60
AAVTIAYQAL ARIQDPAYGC VSYIMALQQQ VASIQHEIEI FSHQLALNST TPLHSIHASP  120
TSNFETLCSP RPDTTGTHCY QNQQTLQLDN SELTAGSIEF DSKMTSELLP LYGWEDQNPF  180
WNSAHHNSLD ELLKGVDC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316271.15e-74LOB domain protein 33
SwissprotQ9LHS81e-47LBD33_ARATH; LOB domain-containing protein 33
TrEMBLB9HT796e-74B9HT79_POPTR; LOB domain protein 33
STRINGPOPTR_0010s20800.12e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.18e-49LOB domain-containing protein 33